PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780384.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 238aa    MW: 26217.1 Da    PI: 4.7629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-1955106156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     + y+GVr ++ +g+Wv+eIr p++   + r++lg++ t+e+Aa+a++ a+++++ge
  XP_009780384.1  55 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTPEMAARAHDVAALSIKGE 106
                     68*****998.**********843...6************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1355106IPR001471AP2/ERF domain
SMARTSM003804.8E-3756119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3156114IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2156114IPR016177DNA-binding domain
PROSITE profilePS5103223.28856113IPR001471AP2/ERF domain
PRINTSPR003675.2E-105768IPR001471AP2/ERF domain
CDDcd000188.11E-3157113No hitNo description
PRINTSPR003675.2E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAEFGVEPSS FSSNYTNNMV LDSSNKSKTE EPEEKRRIKR TRDQYFNSTE NRAYPVYRGV  60
RMRSWGKWVS EIRQPRKKSR IWLGTYPTPE MAARAHDVAA LSIKGESAIL NFPQLVESLP  120
RPASVSPTDV QAAAAKAAAM ENVLNSASSS SSSSSSALTS VSTSMETTAA SEELLGQIIE  180
LPSLEGTFDS DELKLRDSAD GWVYPPLPWG AFDGEFCGYS FEQTAIGESL ISTTDWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1557118668ATERF1
3gcc_A8e-1557118668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258625e-78JN125862.1 Solanum tuberosum dehydration-responsive element-binding protein DREB1 (DREB1) mRNA, complete cds.
GenBankJX4288035e-78JX428803.1 Solanum tuberosum AP2 c4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780384.11e-175PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD35e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLG3K5144e-84G3K514_SOLTU; AP2 c4
STRINGPGSC0003DMT4000680401e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-55ERF family protein